TE-Seq: A Transposable Element Annotation & RNA-Seq Pipeline! This project consists of a snakemake pipeline to analyze transposable element (TE) sequencing data. github.com/maxfieldk/TE-S…

Avocado genome decoded! High-res assembly reveals 40,629 genes, 57.9% repeats, & 376 disease resistance genes. Key genes for fatty acid biosynthesis identified. #AvocadoGenomics Oxford Journals Details:doi.org/10.1093/hr/uha…

Major academic publishers' revenue and what they pay authors and reviewers: Revenue: Elsevier: $3.9 billion Springer Nature: $2 billion Taylor & Francis: $800M Wiley: $1.8 billion They pay: Academic authors: $0 Peer reviewers: $0

I received a postdoc oral presentation award at SESJ 2024 (Society of Evolutionary Studies, Japan) 日本進化学会2024年大会 for our study on the coevolutionary dynamics between NLRs and their inhibitor! I would like to thank the members of Sophien Kamoun for your kind support✨ #SESJ2024

I'm excited to launch the free tier of PlatePlanner! PlatePlanner is a tool for research scientists that helps them quickly create beautiful platemaps.

#PLOSBiology: GetGenome: Overcoming inequalities in access to genomics technology dx.plos.org/10.1371/journa…

I've always liked informational views of evolution, so when Arvid Ågren asked if I'd review Chris Adami's new book, I was delighted. It's a great book, and I discuss connections to Maynard Smith and Lewontin's ideas, measurement, Fisher's fundamental theorem, and more.

Preprint! 4 years of work, 9 labs, 402 RNA-seq samples, 22 ferns, #histology and #biochemistry. Outcome: 'Comparative #transcriptomics in #ferns reveals key innovations and divergent #evolution of secondary cell wall' #plantsci biorxiv.org/content/10.110…

Excited to see our peer-reviewed work on recurrent horizontal mini-chromosome transfer in the blast fungus now out! ✨ academic.oup.com/mbe/advance-ar… Thanks team 🌈 Sergio Latorre Thorsten Langner Sophien Kamoun Hernán A. Burbano Yu Sugihara Joe Win Adeline Harant Angus Malmgren

Hi friends, check out the version Molecular Biology and Evolution of our recent work. A case of horizontal transfer of an entire miniChr in the rice blast fungus CLOE: UCL Centre for Life's Origins and Evolution UCL Biosciences The Sainsbury Laboratory Cristina Barragan Sophien Kamoun Thorsten Langner Yu Sugihara Joe Win Angus Malmgren Adeline Harant

OrthoBrowser: Gene Family Analysis and Visualization biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

How awesome is this: Scandinavian Plant Physiology Society - SPPS has sponsored the English translation of the book Beyond GMO first published by The Royal Swedish Academy of Sciences. It is open for all, as a digital publication 👇 spps.se/e-book-beyond-…

#GMO wheat is coming to the United States! A great example of #innovation in the cereals space. 🌱

Bio-protocol: Phylogenomics of Plant NLR Immune Receptors to Identify Functionally Conserved Sequence Motifs sco.lt/5bePT6

PLOS Biology: GetGenome: Overcoming inequalities in access to genomics technology sco.lt/5kjZdA

The SplitsTree App: interactive analysis and visualization using phylogenetic trees and networks | Nature Methods nature.com/articles/s4159…

Super excited to share our latest work on the native in-cell organization of the mitochondrial respiratory chain 🥳 Using cryo-electron tomography🔬, we show how the respiratory complexes (and other complexes) are organized inside native mitochondria!  biorxiv.org/content/10.110…

NEW REVIEW OUT Fungal pathogens (in fact, not only fungi and not only pathogens!) manipulate the microbiota of their plant hosts during infection. We reviewed the processes involved, focusing on effector proteins with selective antimicrobial activities. sciencedirect.com/science/articl…

We are looking for a Postdoc! Our lab offers a staff scientist position. If you share our fascination with plant-microbe interactions, take a look: ag-doehlemann.botanik.uni-koeln.de/sites/ag_doehl…

GW: ultra-fast chromosome-scale visualisation of genomics data. #ChromosomeVisualization #GenomicsData bioRxiv Bioinfo #Bioinformatics biorxiv.org/content/10.110…